SNP Profiles of AMAZ 3/2 [CHA]   View Data

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 Key

 1234567891011121314
_Input profile
TTTTCCGGAGATGGTTAAGTCCCCGGCC
1._AMAZ_3_/2
__CC____TT__CC_GG_
2._AMAZ_3_/2
__CC____TT__CC_GG_
3._AMAZ_3_/2
__CC____TT__CC_GG_
4._AMAZ_3_/2
__CC____TT__CC_GG_
5._AMAZ_3_/2
__CC____TT__CC_GG_
6._AMAZ_3_/2
__CC____TT__CC_GG_
7._AMAZ_3_/2
__CC____TT__CC_GG_
8._AMAZ_3_/2
__CC____TT__CC_GG_
9._AMAZ_3_/2
__CC____TT__CC_GG_
10._AMAZ_3_/2
__CC____TT__CC_GG_
11._RUQ_91
__CC____TT__CC_GG_
12._AMAZ_3_/2
__CC____TT__CC_GG_
13._RUQ_91
__CC____TT______
14._GC-03-022-2-11
__CC____TT__CC_GG_
15._GC-03-022-2-11
__CC____TT__CC_GG_
16._GC-03-022-2-11
__CC____TT__CC_GG_
17._GC-03-022-2-11
__CC____TT__CC_GG_
18._GC-03-022-2-11
__CC____TT__CC_GG_
19._GC-03-022-2-11
__CC____TT__CC_GG_
20._GC-03-022-2-11
__CC____TT__CC_GG_
21._GC-03-022-2-11
__CC____TT__CC_GG_
22._GC-03-022-2-11
__CC____TT__CC_GG_
23._GC-03-022-2-11
__CC____TT__CC_GG_
24._RUQ_91
__GG____AA____GG_
25._AMAZ_3_/2
__CC____GT__CC_AG_
26._AMAZ_3_/2
__CC____GT__CC_AG_
27._AMAZ_3_/2
__CC____GT__CC_AG_
28._AMAZ_3_/2
__CC____GT__CC_AG_
29._GC-03-022-2-11
__CC____GT__CC_AG_
30._GC-03-022-2-11
__CC____GT__CC_AG_
31._GC-03-022-2-11
__CC____GT__CC_AG_
32._GC-03-022-2-11
__CC____GT__CC_AG_
 1516171819202122232425262728
_Input profile
AACCCCAACCGGCGTTAAAATTCCAAGT
1._AMAZ_3_/2
___AA__CG______GT
2._AMAZ_3_/2
___AA__CG______GT
3._AMAZ_3_/2
___AA__CG______GT
4._AMAZ_3_/2
___AA__CG______GT
5._AMAZ_3_/2
___AA__CG______GT
6._AMAZ_3_/2
___AA__CG______GT
7._AMAZ_3_/2
___AA__CG______GT
8._AMAZ_3_/2
___AA__CG______GT
9._AMAZ_3_/2
___AA__CG______GT
10._AMAZ_3_/2
___AA__CG______GT
11._RUQ_91
___AA__CG______GT
12._AMAZ_3_/2
___AA__CG______GT
13._RUQ_91
__-AA_--__-__-GT
14._GC-03-022-2-11
__CCAA_GGCGCG_AA__AAGT
15._GC-03-022-2-11
__CCAA_GGCGCG_AA__AAGT
16._GC-03-022-2-11
__CCAA_GGCGCG_AA__AAGT
17._GC-03-022-2-11
__CCAA_GGCGCG_AA__AAGT
18._GC-03-022-2-11
__CCAA_GGCGCG_AA__AAGT
19._GC-03-022-2-11
__CCAA_GGCGCG_AA__AAGT
20._GC-03-022-2-11
__CCAA_GGCGCG_AA__AAGT
21._GC-03-022-2-11
__CCAA_GGCGCG_AA__AAGT
22._GC-03-022-2-11
__CCAA_GGCGCG_AA__AAGT
23._GC-03-022-2-11
__CCAA_GGCGCG_AA__AAGT
24._RUQ_91
___AA_GGCGCG_AA__AAAC
25._AMAZ_3_/2
___AG__GG______GG
26._AMAZ_3_/2
___AG__GG______GG
27._AMAZ_3_/2
___AG__GG______GG
28._AMAZ_3_/2
___AG__GG______GG
29._GC-03-022-2-11
__CCAG_GGGGCG_CC__GGGG
30._GC-03-022-2-11
__CCAG_GGGGCG_CC__GGGG
31._GC-03-022-2-11
__CCAG_GGGGCG_CC__GGGG
32._GC-03-022-2-11
__CCAG_GGGGCG_CC__GGGG
 2930313233343536373839404142
_Input profile
TTCGAACCAATTTTAAATAACCCCAACT
1._AMAZ_3_/2
__AA____AA__CC___
2._AMAZ_3_/2
__AA____AA__CC___
3._AMAZ_3_/2
__AA____AA__CC___
4._AMAZ_3_/2
__AA____AA__CC___
5._AMAZ_3_/2
__AA____AA__CC___
6._AMAZ_3_/2
__AA____AA__CC___
7._AMAZ_3_/2
__AA____AA__CC___
8._AMAZ_3_/2
__AA____AA__CC___
9._AMAZ_3_/2
__AA____AA__CC___
10._AMAZ_3_/2
__AA____AA__CC___
11._RUQ_91
__AA____AA__CC___
12._AMAZ_3_/2
__AA____AA__CC___
13._RUQ_91
TT_____TTAA__CC___
14._GC-03-022-2-11
TT_AA___TTAA__CC___
15._GC-03-022-2-11
TT_AA___TTAA__CC___
16._GC-03-022-2-11
TT_AA___TTAA__CC___
17._GC-03-022-2-11
TT_AA___TTAA__CC___
18._GC-03-022-2-11
TT_AA___TTAA__CC___
19._GC-03-022-2-11
TT_AA___TTAA__CC___
20._GC-03-022-2-11
TT_AA___TTAA__CC___
21._GC-03-022-2-11
TT_AA___TTAA__CC___
22._GC-03-022-2-11
TT_AA___TTAA__CC___
23._GC-03-022-2-11
TT_AA___TTAA__CC___
24._RUQ_91
______AAAA__CC___
25._AMAZ_3_/2
__AA____AC__CC___
26._AMAZ_3_/2
__AA____AC__CC___
27._AMAZ_3_/2
__AA____AC__CC___
28._AMAZ_3_/2
_______AC__CC___
29._GC-03-022-2-11
CT_AA___CCAC__CC___
30._GC-03-022-2-11
CT_AA___CCAC__CC___
31._GC-03-022-2-11
CT_AA___CCAC__CC___
32._GC-03-022-2-11
CT_____CCAC__CC___
 4344454647484950515253545556
_Input profile
AAGGAATTAATTAGTTAAAATTGGCCTT
1._AMAZ_3_/2
____AA___AA_____
2._AMAZ_3_/2
____AA___AA_____
3._AMAZ_3_/2
____AA___AA_____
4._AMAZ_3_/2
____AA___AA_____
5._AMAZ_3_/2
____AA___AA_____
6._AMAZ_3_/2
____AA___AA_____
7._AMAZ_3_/2
____AA___AA_____
8._AMAZ_3_/2
____AA___AA_____
9._AMAZ_3_/2
____AA___AA_____
10._AMAZ_3_/2
____AA___AA_____
11._RUQ_91
____AA___AA_____
12._AMAZ_3_/2
____AA___AA_____
13._RUQ_91
_GG__AA___AA_____
14._GC-03-022-2-11
_GG__AA___AA_____
15._GC-03-022-2-11
_GG__AA___AA_____
16._GC-03-022-2-11
_GG__AA___AA_____
17._GC-03-022-2-11
_GG__AA___AA_____
18._GC-03-022-2-11
_GG__AA___AA_____
19._GC-03-022-2-11
_GG__AA___AA_____
20._GC-03-022-2-11
_GG__AA___AA_____
21._GC-03-022-2-11
_GG__AA___AA_____
22._GC-03-022-2-11
_GG__AA___AA_____
23._GC-03-022-2-11
_GG__AA___AA_____
24._RUQ_91
_GG__AA___AA_____
25._AMAZ_3_/2
____GG___AC_____
26._AMAZ_3_/2
____GG___AC_____
27._AMAZ_3_/2
____GG___AC_____
28._AMAZ_3_/2
____GG___AC_____
29._GC-03-022-2-11
_GG__GG___AC_____
30._GC-03-022-2-11
_GG__GG___AC_____
31._GC-03-022-2-11
_GG__GG___AC_____
32._GC-03-022-2-11
_GG__GG___AC_____
 5758            
_Input profile
ACCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._RUQ_91
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._RUQ_91
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._RUQ_91
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._AMAZ_3_/2
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GC-03-022-2-11
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: AMAZ_3_/2 RUQ_91

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

2._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

4._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

5._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

6._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

7._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

8._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

9._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

10._AMAZ_3_/2

identical
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

11._AMAZ_3_/2 RUQ_91

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._AMAZ_3_/2

identical
12 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

13._AMAZ_3_/2 RUQ_91

identical
11 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

15._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

17._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

19._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

20._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

22._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

23._AMAZ_3_/2 GC-03-022-2-11

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

24._AMAZ_3_/2 RUQ_91

68.8 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

25._AMAZ_3_/2

62.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

26._AMAZ_3_/2

62.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

27._AMAZ_3_/2

62.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

28._AMAZ_3_/2

59.1 %
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

29._AMAZ_3_/2 GC-03-022-2-11

55 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

30._AMAZ_3_/2 GC-03-022-2-11

55 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

31._AMAZ_3_/2 GC-03-022-2-11

55 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

32._AMAZ_3_/2 GC-03-022-2-11

52.6 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP546 39TcSNP529 40TcSNP522
41TcSNP519 42TcSNP421 43TcSNP363 44TcSNP329 45TcSNP305
46TcSNP290 47TcSNP230 48TcSNP194 49TcSNP189 50TcSNP176
51TcSNP144 52TcSNP143 53TcSNP131 54TcSNP52 55TcSNP49
56TcSNP33 57TcSNP19 58TcSNP13